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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CMS0059Oligopeptide transport integral membrane protein. (320 aa)    
Predicted Functional Partners:
CMS0061
Putative ABC transporter ATP-binding subunit; Belongs to the ABC transporter superfamily.
  
 0.996
CMS0062
Putative ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.
  
 0.995
CMS2880
Putative ABC transporter ATP-binding subunit.
  
 0.983
CMS2881
Putative ABC transporter ATP-binding subunit.
  
 0.979
CMS1562
Putative ABC transporter ATP-binding subunit.
  
 0.977
CMS0060
Oligopeptide transport system integral membrane protein.
  
 0.970
CMS0058
Putative extracellular solute-binding protein.
 
 0.966
CMS1509
Putative nucleotide-binding ABC transporter subunit; Belongs to the ABC transporter superfamily.
  
 0.950
CMS2213
Putative nucleotide-binding ABC transporter subunit; Belongs to the ABC transporter superfamily.
  
 0.949
CMS0798
Putative nucleotide-binding ABC transporter subunit; Belongs to the ABC transporter superfamily.
  
 0.944
Your Current Organism:
Clavibacter michiganensis sepedonicus
NCBI taxonomy Id: 31964
Other names: ATCC 33113, Aplanobacter sepedonicum, Bacterium sepedonicum, C. michiganensis subsp. sepedonicus, CCUG 23908, CFBP 2049, CIP 104844, Clavibacter michiganense sepedonicum, Clavibacter michiganensis sepedonicum, Clavibacter michiganensis subsp. sepedonicus, Clavibacter sepedonicus nom. illegit., Corynebacterium michiganense subsp. sepedonicum, Corynebacterium sepedonicum, DSM 20744, ICMP 2535, JCM 9667, LMG 2889, LMG:2889, Mycobacterium sepedonicum, NCPPB 2137, Phytomonas sepedonica, Pseudobacterium sepedonicum
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