STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CMS0616Putative integral membrane protein. (340 aa)    
Predicted Functional Partners:
CMS0613
Putative two-component response regulator.
 
   0.835
CMS2060
Putative two-component system sensor kinase.
 
     0.796
CMS2063
Putative two-component system response regulator.
 
   0.789
CMS0642A
Putative exopolysaccharide production protein; Tandem duplication suggested by similarity to upstream CDS.
  
     0.770
CMS0165
Conserved hypothetical protein (pseudogene); N.
  
     0.755
CMS0234
Putative large membrane associated protein.
  
     0.735
CMS3023
Putative beta-lactamase.
  
     0.722
CMS2761
Conserved hypothetical protein.
  
     0.714
CMS3061
Putative exported protein.
  
     0.711
CMS0642B
Putative exopolysaccharide production protein; Tandem duplication suggested by similarity to downstream CDS.
  
     0.615
Your Current Organism:
Clavibacter michiganensis sepedonicus
NCBI taxonomy Id: 31964
Other names: ATCC 33113, Aplanobacter sepedonicum, Bacterium sepedonicum, C. michiganensis subsp. sepedonicus, CCUG 23908, CFBP 2049, CIP 104844, Clavibacter michiganense sepedonicum, Clavibacter michiganensis sepedonicum, Clavibacter michiganensis subsp. sepedonicus, Clavibacter sepedonicus nom. illegit., Corynebacterium michiganense subsp. sepedonicum, Corynebacterium sepedonicum, DSM 20744, ICMP 2535, JCM 9667, LMG 2889, LMG:2889, Mycobacterium sepedonicum, NCPPB 2137, Phytomonas sepedonica, Pseudobacterium sepedonicum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.