STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRN66933.1Hypothetical protein. (110 aa)    
Predicted Functional Partners:
KRN66934.1
Hypothetical protein.
 
  
 0.968
KRN67545.1
Hypothetical protein.
  
     0.759
KRN64333.1
Amino acid transport protein.
 
  
 0.666
KRN65352.1
Hypothetical protein.
  
     0.555
KRN67309.1
XRE family transcriptional regulator.
 
     0.541
KRN67710.1
Hypothetical protein.
  
     0.540
KRN67711.1
Hypothetical protein.
  
     0.533
KRN66936.1
D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.
       0.489
KRN67637.1
Hypothetical protein.
  
     0.477
KRN66935.1
Sortase related acyltransferase.
       0.475
Your Current Organism:
Pediococcus cellicola
NCBI taxonomy Id: 319652
Other names: AS 1.3787, DSM 17757, JCM 14152, LMG 22956, LMG:22956, P. cellicola, Pediococcus cellicola Zhang et al. 2005, Pediococcus sp. Z-1, Pediococcus sp. Z-8, strain Z-8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.