node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Dgeo_0161 | rny | Dgeo_0161 | Dgeo_0162 | Hypothetical protein. | Metal dependent phosphohydrolase; Endoribonuclease that initiates mRNA decay. Belongs to the RNase Y family. | 0.449 |
Dgeo_0165 | Dgeo_2136 | Dgeo_0165 | Dgeo_2136 | Single-strand binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism. | TIGRFAM: Competence-damaged protein: (1.5e-68); PFAM: molybdopterin binding domain: (1.1e-55) CinA-like: (5.7e-09); KEGG: dra:DR2338 cinA protein, ev=1e-168, 76% identity; Belongs to the CinA family. | 0.530 |
Dgeo_0165 | rny | Dgeo_0165 | Dgeo_0162 | Single-strand binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism. | Metal dependent phosphohydrolase; Endoribonuclease that initiates mRNA decay. Belongs to the RNase Y family. | 0.525 |
Dgeo_0165 | rplI | Dgeo_0165 | Dgeo_0163 | Single-strand binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism. | Ribosomal protein L9; Binds to the 23S rRNA. | 0.903 |
Dgeo_0165 | rpsR | Dgeo_0165 | Dgeo_0164 | Single-strand binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism. | Ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family. | 0.864 |
Dgeo_0231 | rny | Dgeo_0231 | Dgeo_0162 | PFAM: PSP1: (1.9e-37); KEGG: dra:DR2511 hypothetical protein, ev=1e-130, 83% identity. | Metal dependent phosphohydrolase; Endoribonuclease that initiates mRNA decay. Belongs to the RNase Y family. | 0.779 |
Dgeo_0603 | pnp | Dgeo_0603 | Dgeo_0401 | ATP-dependent RNA helicase DbpA; PFAM: helicase-like: (2.5e-35) DEAD/DEAH box helicase-like: (1.1e-65); KEGG: dra:DR1624 RNA helicase, ev=0.0, 80% identity; Belongs to the DEAD box helicase family. | Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 0.922 |
Dgeo_0603 | rny | Dgeo_0603 | Dgeo_0162 | ATP-dependent RNA helicase DbpA; PFAM: helicase-like: (2.5e-35) DEAD/DEAH box helicase-like: (1.1e-65); KEGG: dra:DR1624 RNA helicase, ev=0.0, 80% identity; Belongs to the DEAD box helicase family. | Metal dependent phosphohydrolase; Endoribonuclease that initiates mRNA decay. Belongs to the RNase Y family. | 0.432 |
Dgeo_2136 | Dgeo_0165 | Dgeo_2136 | Dgeo_0165 | TIGRFAM: Competence-damaged protein: (1.5e-68); PFAM: molybdopterin binding domain: (1.1e-55) CinA-like: (5.7e-09); KEGG: dra:DR2338 cinA protein, ev=1e-168, 76% identity; Belongs to the CinA family. | Single-strand binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism. | 0.530 |
Dgeo_2136 | rny | Dgeo_2136 | Dgeo_0162 | TIGRFAM: Competence-damaged protein: (1.5e-68); PFAM: molybdopterin binding domain: (1.1e-55) CinA-like: (5.7e-09); KEGG: dra:DR2338 cinA protein, ev=1e-168, 76% identity; Belongs to the CinA family. | Metal dependent phosphohydrolase; Endoribonuclease that initiates mRNA decay. Belongs to the RNase Y family. | 0.689 |
Dgeo_2136 | rpsR | Dgeo_2136 | Dgeo_0164 | TIGRFAM: Competence-damaged protein: (1.5e-68); PFAM: molybdopterin binding domain: (1.1e-55) CinA-like: (5.7e-09); KEGG: dra:DR2338 cinA protein, ev=1e-168, 76% identity; Belongs to the CinA family. | Ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family. | 0.581 |
pfkA | rny | Dgeo_1637 | Dgeo_0162 | 6-phosphofructokinase; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis. | Metal dependent phosphohydrolase; Endoribonuclease that initiates mRNA decay. Belongs to the RNase Y family. | 0.442 |
pnp | Dgeo_0603 | Dgeo_0401 | Dgeo_0603 | Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | ATP-dependent RNA helicase DbpA; PFAM: helicase-like: (2.5e-35) DEAD/DEAH box helicase-like: (1.1e-65); KEGG: dra:DR1624 RNA helicase, ev=0.0, 80% identity; Belongs to the DEAD box helicase family. | 0.922 |
pnp | rny | Dgeo_0401 | Dgeo_0162 | Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | Metal dependent phosphohydrolase; Endoribonuclease that initiates mRNA decay. Belongs to the RNase Y family. | 0.594 |
pnp | rplI | Dgeo_0401 | Dgeo_0163 | Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | Ribosomal protein L9; Binds to the 23S rRNA. | 0.463 |
pnp | rpsR | Dgeo_0401 | Dgeo_0164 | Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | Ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family. | 0.402 |
rnj | rny | Dgeo_2150 | Dgeo_0162 | Beta-lactamase-like protein; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay. | Metal dependent phosphohydrolase; Endoribonuclease that initiates mRNA decay. Belongs to the RNase Y family. | 0.487 |
rny | Dgeo_0161 | Dgeo_0162 | Dgeo_0161 | Metal dependent phosphohydrolase; Endoribonuclease that initiates mRNA decay. Belongs to the RNase Y family. | Hypothetical protein. | 0.449 |
rny | Dgeo_0165 | Dgeo_0162 | Dgeo_0165 | Metal dependent phosphohydrolase; Endoribonuclease that initiates mRNA decay. Belongs to the RNase Y family. | Single-strand binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism. | 0.525 |
rny | Dgeo_0231 | Dgeo_0162 | Dgeo_0231 | Metal dependent phosphohydrolase; Endoribonuclease that initiates mRNA decay. Belongs to the RNase Y family. | PFAM: PSP1: (1.9e-37); KEGG: dra:DR2511 hypothetical protein, ev=1e-130, 83% identity. | 0.779 |