STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dgeo_0168PFAM: protein kinase: (6.1e-27); SMART: Tyrosine protein kinase: (4.3e-14) Serine/threonine protein kinase: (2.2e-42); KEGG: dra:DR1213 serine/threonine protein kinase, putative, ev=1e-100, 58% identity. (362 aa)    
Predicted Functional Partners:
Dgeo_0229
PFAM: protein phosphatase 2C-like: (3.5e-07); KEGG: dra:DR2513 hypothetical protein, ev=1e-117, 66% identity.
 
 
 0.877
prfB
Peptide chain release factor 2; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.
  
    0.797
Dgeo_1789
Diguanylate cyclase with GAF sensor; TIGRFAM: GGDEF domain: (1.7e-05); PFAM: GGDEF: (4.2e-06) GAF: (4.2e-18); KEGG: dra:DRB0044 GGDEF family protein, ev=1e-42, 31% identity.
     
 0.423
Dgeo_0389
Histidine kinase; PFAM: ATP-binding region, ATPase-like: (3.7e-34) histidine kinase A-like: (0.00028); KEGG: dra:DRB0029 sensor histidine kinase/response regulator, ev=7e-46, 44% identity.
     
 0.418
Your Current Organism:
Deinococcus geothermalis
NCBI taxonomy Id: 319795
Other names: D. geothermalis DSM 11300, Deinococcus geothermalis AG-3a, Deinococcus geothermalis CIP 105573, Deinococcus geothermalis DSM 11300, Deinococcus geothermalis str. DSM 11300, Deinococcus geothermalis strain DSM 11300
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.