STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dgeo_0229PFAM: protein phosphatase 2C-like: (3.5e-07); KEGG: dra:DR2513 hypothetical protein, ev=1e-117, 66% identity. (348 aa)    
Predicted Functional Partners:
Dgeo_1498
rRNA methyltransferase, sun family protein; PFAM: Fmu (Sun): (9e-14) NusB/RsmB/TIM44: (4.9e-28); KEGG: dra:DR2168 sun protein, putative, ev=1e-161, 72% identity; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
  
 
 0.974
Dgeo_0744
PFAM: protein kinase: (2.2e-14); SMART: Tyrosine protein kinase: (4.4e-10) Serine/threonine protein kinase: (6e-21); KEGG: dra:DR1243 serine/threonine protein kinase, putative, ev=2e-89, 61% identity.
 
 0.912
Dgeo_0728
PFAM: protein kinase: (1.1e-57) NHL repeat: (0.058); SMART: Tyrosine protein kinase: (6.4e-16) Serine/threonine protein kinase: (7.7e-69); KEGG: dra:DR0058 serine/threonine protein kinase, putative, ev=0.0, 70% identity.
 
 0.892
Dgeo_1397
PFAM: protein kinase: (4.7e-40) Pyrrolo-quinoline quinone: (1.3e-05); SMART: Tyrosine protein kinase: (1.2e-12) Serine/threonine protein kinase: (1.5e-55); KEGG: dra:DR2518 serine/threonine protein kinase, putative, ev=0.0, 75% identity.
 
 0.883
gcvT
Glycine cleavage system T protein; The glycine cleavage system catalyzes the degradation of glycine.
   
 0.882
Dgeo_0168
PFAM: protein kinase: (6.1e-27); SMART: Tyrosine protein kinase: (4.3e-14) Serine/threonine protein kinase: (2.2e-42); KEGG: dra:DR1213 serine/threonine protein kinase, putative, ev=1e-100, 58% identity.
 
 
 0.877
Dgeo_1078
PFAM: protein kinase: (1.5e-12); SMART: Tyrosine protein kinase: (2.8e-09) Serine/threonine protein kinase: (8.7e-16); KEGG: dra:DR1851 serine/threonine-protein kinase-related protein, ev=3e-77, 61% identity.
 
 
 0.877
Dgeo_0230
TIGRFAM: YjgF-like protein: (1e-80); PFAM: Endoribonuclease L-PSP: (1e-64); KEGG: dra:DR2512 protein translation inhibitor, putative, ev=2e-49, 80% identity.
       0.840
fmt
methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.
  
   0.802
Dgeo_1953
PASTA domains protein; PFAM: PASTA: (8.2e-11); KEGG: dra:DR0350 hypothetical protein, ev=1e-164, 56% identity.
 
 
 0.794
Your Current Organism:
Deinococcus geothermalis
NCBI taxonomy Id: 319795
Other names: D. geothermalis DSM 11300, Deinococcus geothermalis AG-3a, Deinococcus geothermalis CIP 105573, Deinococcus geothermalis DSM 11300, Deinococcus geothermalis str. DSM 11300, Deinococcus geothermalis strain DSM 11300
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.