STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dgeo_0475PFAM: alpha amylase, catalytic region: (5.5e-72); SMART: Alpha amylase, catalytic subdomain: (2e-92); KEGG: dra:DR0723 glycosyl hydrolase, family 13, ev=0.0, 63% identity. (608 aa)    
Predicted Functional Partners:
Dgeo_0667
KEGG: ttj:TTHA1261 4-alpha-glucanotransferase (amylomaltase) (disproportionating enzyme) (D-enzyme), ev=1e-159, 55% identity; TIGRFAM: 4-alpha-glucanotransferase: (4.9e-109); PFAM: glycoside hydrolase, family 77: (7.7e-217).
 
 
 0.972
Dgeo_0572
Amylosucrase; PFAM: alpha amylase, catalytic region: (2.5e-20); SMART: Alpha amylase, catalytic subdomain: (2.7e-36); KEGG: dra:DR0933 alpha-amlyase, ev=0.0, 74% identity.
  
  
0.928
Dgeo_0672
PFAM: alpha amylase, catalytic region: (4.5e-114); SMART: Alpha amylase, catalytic subdomain: (4.1e-148); KEGG: dra:DR1375 alpha-glucosidase, ev=0.0, 77% identity.
  
  
 
0.928
Dgeo_0537
KEGG: dra:DR2036 trehalose synthase, putative, ev=0.0, 84% identity; TIGRFAM: Trehalose synthase-like: (0); PFAM: alpha amylase, catalytic region: (1.5e-59); SMART: Alpha amylase, catalytic subdomain: (4e-106).
  
  
 
0.927
Dgeo_0611
Isoamylase / pullulanase; PFAM: alpha amylase, catalytic region: (3.5e-93); SMART: Alpha amylase, catalytic subdomain: (1.1e-106); KEGG: dra:DR1141 glycosyl hydrolase, family 13, ev=0.0, 72% identity.
  
  
 
0.920
Dgeo_1421
Fructokinase, ScrK; PFAM: PfkB: (1.4e-47); KEGG: dra:DR0728 fructokinase, ev=1e-134, 78% identity.
 
 
  0.913
Dgeo_0725
Glucan 1,4-alpha-glucosidase; PFAM: glycoside hydrolase 15-related: (1.9e-32); KEGG: mlo:mlr4205 glucoamylase, (glucan 1,4-alpha-glucosidase), ev=1e-150, 42% identity.
    
 0.907
Dgeo_0279
KEGG: dra:DR2265 hypothetical protein, ev=0.0, 69% identity.
   
 0.715
Dgeo_1500
Carbohydrate ABC transporter substrate-binding protein, CUT1 family; PFAM: extracellular solute-binding protein, family 1: (1.3e-32); KEGG: dra:DR0561 maltose transport system substrate-binding protein, ev=1e-166, 70% identity; TC 3.A.1.1.-.
 
  
 0.623
Dgeo_1501
Carbohydrate ABC transporter membrane protein 1, CUT1 family; PFAM: binding-protein-dependent transport systems inner membrane component: (2.1e-13); KEGG: dra:DR0562 maltose transport system permease protein, ev=0.0, 72% identity; TC 3.A.1.1.-.
 
    0.508
Your Current Organism:
Deinococcus geothermalis
NCBI taxonomy Id: 319795
Other names: D. geothermalis DSM 11300, Deinococcus geothermalis AG-3a, Deinococcus geothermalis CIP 105573, Deinococcus geothermalis DSM 11300, Deinococcus geothermalis str. DSM 11300, Deinococcus geothermalis strain DSM 11300
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.