STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dgeo_0572Amylosucrase; PFAM: alpha amylase, catalytic region: (2.5e-20); SMART: Alpha amylase, catalytic subdomain: (2.7e-36); KEGG: dra:DR0933 alpha-amlyase, ev=0.0, 74% identity. (650 aa)    
Predicted Functional Partners:
Dgeo_0672
PFAM: alpha amylase, catalytic region: (4.5e-114); SMART: Alpha amylase, catalytic subdomain: (4.1e-148); KEGG: dra:DR1375 alpha-glucosidase, ev=0.0, 77% identity.
  
  
0.933
Dgeo_0475
PFAM: alpha amylase, catalytic region: (5.5e-72); SMART: Alpha amylase, catalytic subdomain: (2e-92); KEGG: dra:DR0723 glycosyl hydrolase, family 13, ev=0.0, 63% identity.
  
  
0.928
Dgeo_0279
KEGG: dra:DR2265 hypothetical protein, ev=0.0, 69% identity.
   
 0.715
Dgeo_0571
KEGG: dra:DR1261 hypothetical protein, ev=1e-25, 63% identity.
       0.682
rpmI
PFAM: ribosomal protein L35: (2.6e-09); KEGG: dra:DR2005 50S ribosomal protein L35, ev=1e-24, 82% identity; Belongs to the bacterial ribosomal protein bL35 family.
       0.522
rplT
Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
       0.522
proS
prolyl-tRNA synthetase; Catalyzes the attachment of proline to tRNA(Pro) in a two- step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro).
     
 0.473
Dgeo_0541
Isoamylase; KEGG: dra:DR0264 glycogen operon protein GlgX, ev=0.0, 84% identity; TIGRFAM: Glycogen debranching enzyme GlgX: (0); PFAM: glycoside hydrolase, family 13-like: (1.1e-35) alpha amylase, catalytic region: (1.9e-15); SMART: Alpha amylase, catalytic subdomain: (1.2e-11); Belongs to the glycosyl hydrolase 13 family.
 
  
 0.425
Dgeo_0540
KEGG: dra:DR0464 maltooligosyltrehalose trehalohydrolase, putative, ev=0.0, 68% identity; TIGRFAM: Malto-oligosyltrehalose trehalohydrolase: (2.9e-289); PFAM: glycoside hydrolase, family 13-like: (1.8e-12) alpha amylase, catalytic region: (4e-09); SMART: Alpha amylase, catalytic subdomain: (9.6e-12).
 
  
 0.416
Dgeo_1746
PFAM: Fibronectin, type III: (0.0017) alpha amylase, catalytic region: (1.8e-72); SMART: Alpha amylase, catalytic subdomain: (2.7e-82); KEGG: gka:GK0707 alpha-amylase, ev=2e-68, 38% identity; Belongs to the glycosyl hydrolase 13 family.
  
     0.402
Your Current Organism:
Deinococcus geothermalis
NCBI taxonomy Id: 319795
Other names: D. geothermalis DSM 11300, Deinococcus geothermalis AG-3a, Deinococcus geothermalis CIP 105573, Deinococcus geothermalis DSM 11300, Deinococcus geothermalis str. DSM 11300, Deinococcus geothermalis strain DSM 11300
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.