STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
glgB1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily. (652 aa)    
Predicted Functional Partners:
glgA
Glycogen synthase (ADP-glucose); Synthesizes alpha-1,4-glucan chains using ADP-glucose.
 
 0.996
Dgeo_1198
KEGG: dra:DR2195 alpha-glucan phosphorylase, putative, ev=0.0, 77% identity; TIGRFAM: Alpha-glucan phosphorylase: (0); PFAM: glycosyl transferase, family 35: (0.00028).
 
 0.980
Dgeo_0541
Isoamylase; KEGG: dra:DR0264 glycogen operon protein GlgX, ev=0.0, 84% identity; TIGRFAM: Glycogen debranching enzyme GlgX: (0); PFAM: glycoside hydrolase, family 13-like: (1.1e-35) alpha amylase, catalytic region: (1.9e-15); SMART: Alpha amylase, catalytic subdomain: (1.2e-11); Belongs to the glycosyl hydrolase 13 family.
 
 
0.975
glgC
Glucose-1-phosphate adenylyltransferase; Involved in the biosynthesis of ADP-glucose, a building block required for the elongation reactions to produce glycogen. Catalyzes the reaction between ATP and alpha-D-glucose 1-phosphate (G1P) to produce pyrophosphate and ADP-Glc; Belongs to the bacterial/plant glucose-1-phosphate adenylyltransferase family.
 
  
 0.961
Dgeo_0667
KEGG: ttj:TTHA1261 4-alpha-glucanotransferase (amylomaltase) (disproportionating enzyme) (D-enzyme), ev=1e-159, 55% identity; TIGRFAM: 4-alpha-glucanotransferase: (4.9e-109); PFAM: glycoside hydrolase, family 77: (7.7e-217).
 
 
 0.946
Dgeo_0537
KEGG: dra:DR2036 trehalose synthase, putative, ev=0.0, 84% identity; TIGRFAM: Trehalose synthase-like: (0); PFAM: alpha amylase, catalytic region: (1.5e-59); SMART: Alpha amylase, catalytic subdomain: (4e-106).
  
 
0.924
Dgeo_0611
Isoamylase / pullulanase; PFAM: alpha amylase, catalytic region: (3.5e-93); SMART: Alpha amylase, catalytic subdomain: (1.1e-106); KEGG: dra:DR1141 glycosyl hydrolase, family 13, ev=0.0, 72% identity.
  
 
 0.924
Dgeo_0725
Glucan 1,4-alpha-glucosidase; PFAM: glycoside hydrolase 15-related: (1.9e-32); KEGG: mlo:mlr4205 glucoamylase, (glucan 1,4-alpha-glucosidase), ev=1e-150, 42% identity.
  
 
 0.916
Dgeo_1875
TIGRFAM: phosphoglucomutase, alpha-D-glucose phosphate-specific: (0); PFAM: phosphoglucomutase/phosphomannomutase C terminal: (2.9e-12) phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I: (1.1e-35) phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II: (2.5e-17) phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III: (1.9e-32); KEGG: pca:Pcar_1989 phosphoglucomutase, alpha-D-glucose phosphate-specific, ev=0.0, 61% identity.
 
  
 0.884
Dgeo_0982
KEGG: dra:DR1847 hypothetical protein, ev=1e-15, 58% identity.
       0.840
Your Current Organism:
Deinococcus geothermalis
NCBI taxonomy Id: 319795
Other names: D. geothermalis DSM 11300, Deinococcus geothermalis AG-3a, Deinococcus geothermalis CIP 105573, Deinococcus geothermalis DSM 11300, Deinococcus geothermalis str. DSM 11300, Deinococcus geothermalis strain DSM 11300
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