STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trmBtRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. (331 aa)    
Predicted Functional Partners:
Dgeo_2091
Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme, GidA; PFAM: glucose-inhibited division protein A: (2.4e-08) FAD-dependent pyridine nucleotide-disulphide oxidoreductase: (0.00043); KEGG: dra:DR1681 GidA-related protein, ev=1e-106, 78% identity.
 
  
 0.883
Dgeo_2089
PFAM: Methyltransferase type 11: (0.0012) Methyltransferase type 12: (1.1e-10); KEGG: dra:DR1676 hypothetical protein, ev=1e-129, 76% identity.
       0.840
truB
tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily.
 
 
 0.783
Dgeo_1498
rRNA methyltransferase, sun family protein; PFAM: Fmu (Sun): (9e-14) NusB/RsmB/TIM44: (4.9e-28); KEGG: dra:DR2168 sun protein, putative, ev=1e-161, 72% identity; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
  
 
 0.702
truD
Pseudouridylate synthase; Responsible for synthesis of pseudouridine from uracil-13 in transfer RNAs; Belongs to the pseudouridine synthase TruD family.
 
 
 0.672
tilS
tRNA(Ile)-lysidine synthetase-like protein and cytosine deaminase; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family.
  
  
 0.665
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
  
 
 0.567
Dgeo_1777
PFAM: (Uracil-5)-methyltransferase: (0.00015); KEGG: dra:DR0238 hypothetical protein, ev=1e-92, 73% identity; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.
 
  
 0.558
rpmD
PFAM: ribosomal protein L30: (6.3e-12); KEGG: dra:DR2114 50S ribosomal protein L30, ev=3e-16, 72% identity.
   
    0.550
Dgeo_2093
KEGG: dra:DR0360 hypothetical protein, ev=6e-19, 53% identity.
       0.550
Your Current Organism:
Deinococcus geothermalis
NCBI taxonomy Id: 319795
Other names: D. geothermalis DSM 11300, Deinococcus geothermalis AG-3a, Deinococcus geothermalis CIP 105573, Deinococcus geothermalis DSM 11300, Deinococcus geothermalis str. DSM 11300, Deinococcus geothermalis strain DSM 11300
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