STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dgeo_2156KEGG: dra:DR2608 hypothetical protein, ev=3e-51, 70% identity. (139 aa)    
Predicted Functional Partners:
Dgeo_2155
PFAM: malic enzyme-like: (9.3e-106) malic enzyme, NAD-binding: (1.1e-109); KEGG: dra:DR2583 malate oxidoreductase, ev=0.0, 73% identity.
       0.619
Dgeo_2157
PFAM: ribonuclease BN: (2.6e-63); KEGG: dra:DR2609 BrkB protein, putative, ev=1e-128, 62% identity.
       0.576
Dgeo_0608
PFAM: NUDIX hydrolase: (5e-23); KEGG: dra:DR0975 MutT/NUDIX family protein, ev=1e-78, 87% identity; Belongs to the Nudix hydrolase family.
  
     0.573
Dgeo_2154
Malate dehydrogenase (oxaloacetate decarboxylating) (NADP+); PFAM: malic enzyme-like: (3.1e-105) malic enzyme, NAD-binding: (1.4e-109); KEGG: dra:DRA0276 malate oxidoreductase, ev=0.0, 71% identity.
       0.521
Dgeo_0078
PFAM: GCN5-related N-acetyltransferase: (4.1e-10); KEGG: dra:DR2441 hypothetical protein, ev=9e-53, 65% identity.
  
     0.471
Dgeo_2183
TPR repeat protein; PFAM: Tetratricopeptide TPR_4: (0.021) Tetratricopeptide TPR_2: (0.0045); SMART: Tetratricopeptide region: (0.18); KEGG: dra:DRA0288 hypothetical protein, ev=1e-142, 74% identity.
  
     0.464
Dgeo_1012
Membrane domain and Glutamyl-tRNAGlu reductase-like NAD(P) binding domain; KEGG: dra:DR0790 hypothetical protein, ev=0.0, 77% identity; Belongs to the PlsY family.
 
     0.411
Your Current Organism:
Deinococcus geothermalis
NCBI taxonomy Id: 319795
Other names: D. geothermalis DSM 11300, Deinococcus geothermalis AG-3a, Deinococcus geothermalis CIP 105573, Deinococcus geothermalis DSM 11300, Deinococcus geothermalis str. DSM 11300, Deinococcus geothermalis strain DSM 11300
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.