STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rbcRTranscription regulator of rubisco operon, RbcR (LysR family); Similar to sll1594 of Synechocystis sp. PCC 6803; Belongs to the LysR transcriptional regulatory family. (311 aa)    
Predicted Functional Partners:
ndhF-III
NADH2 dehydrogenase (plastoquinone) chain 5; Similar to sll1732 of Synechocystis sp. PCC 6803.
     
 0.844
ndhD-III
Proton-translocating NADH-quinone oxidoreductase (NADH dehydrogenase subunit 4); Similar to sll1733 of Synechocystis sp> PCC 6803.
     
 0.807
cupA
CO2 hydration protein; Similar to sll1724 of Synechocystis sp. PCC 6803; protein involved in low CO2-inducible high affinity CO2 uptake.
     
 0.803
rbcL
Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site.
 
   
 0.796
bicA
Bicarbonate transporter, BicA; Low/medium affinity, Na(+)-dependent bicarbonate transporter.
      
 0.760
rbcS
Ribulose bisphosphate carboxylase, small subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site (By similarity); Belongs to the RuBisCO small chain family.
  
   
 0.736
sbtA
Sodium-dependent bicarbonate transporter; Similar to slr1512 of Synechocystis sp. PCC 6803.
     
 0.697
ACA99942.1
Two-component response regulator; Similar to all1704 of Nostoc sp. PCC 7120.
  
  
 0.639
ccmM
Carbon dioxide concentrating mechanism protein; Similar to sll1031 of Synechocystis sp. PCC 6803.
      
 0.619
ndhD
NADH dehydrogenase subunit 4; NDH-1 shuttles electrons from NAD(P)H, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 4 family.
      
 0.600
Your Current Organism:
Synechococcus sp. PCC7002
NCBI taxonomy Id: 32049
Other names: Agmenellum quadruplicatum, Agmenellum quadruplicatum PR-6, S. sp. PCC 7002, Synechococcus PCC7002 PR-6, Synechococcus sp. (ATCC 27264), Synechococcus sp. (PCC 7002), Synechococcus sp. (strain PCC 7002), Synechococcus sp. PCC 7002
Server load: low (38%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.