STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bioYBioY protein; Similar to slr1365 of Synechocystis sp. PCC 6803; precise function unknown but thought to play a role in biotin biosynthesis. (213 aa)    
Predicted Functional Partners:
ACB00130.1
Putative cobalt transport protein; Similar to slr1978 of Synechocystis sp. PCC 6803.
 
 0.994
ACA98168.1
ABC-type transport protein, ATP-binding protein; Similar to sll1623 of Synechocystis sp. PCC 6803.
   
 0.957
ACB00703.1
ABC transporter family protein; Similar to slr0354 of Synechocystis sp. PCC 6803.
   
 0.957
bioB
Biotin synthase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family.
 
  
 0.896
lspA
Signal peptidase II; This protein specifically catalyzes the removal of signal peptides from prolipoproteins; Belongs to the peptidase A8 family.
       0.654
ACB00258.1
Conserved hypothetical protein; Similar to alr4310 of Nostoc sp. PCC 7120.
  
     0.588
ACA99014.1
Conserved hypothetical protein; Similar to slr0731 in Synechocystis sp. PCC 6803.
  
     0.578
ACB00397.1
Conserved hypothetical protein; Similar to sll0827 of Synechocystis sp. strain PCC 6803.
  
     0.553
ACB00671.1
Conserved hypothetical protein; Similar to slr1796 of Synechocystis sp. PCC 6803.
  
     0.547
bioD
Putative dethiobiotin synthase; Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8- diaminopelargonic acid (DAPA) to form an ureido ring.
  
  
 0.543
Your Current Organism:
Synechococcus sp. PCC7002
NCBI taxonomy Id: 32049
Other names: Agmenellum quadruplicatum, Agmenellum quadruplicatum PR-6, S. sp. PCC 7002, Synechococcus PCC7002 PR-6, Synechococcus sp. (ATCC 27264), Synechococcus sp. (PCC 7002), Synechococcus sp. (strain PCC 7002), Synechococcus sp. PCC 7002
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