Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| dnaG | rpoA | SYNPCC7002_A1345 | SYNPCC7002_A1042 | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.566 |
| dnaG | rpoB | SYNPCC7002_A1345 | SYNPCC7002_A2045 | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.838 |
| dnaG | rpoC1 | SYNPCC7002_A1345 | SYNPCC7002_A2044 | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | DNA-directed RNA polymerase, gamma subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.434 |
| dnaG | rpoD-2 | SYNPCC7002_A1345 | SYNPCC7002_A2014 | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. | 0.864 |
| glnB | lrtA | SYNPCC7002_A1285 | SYNPCC7002_A0263 | Nitrogen regulatory protein P-II; Similar to ssl0707 in Synechocystis sp. PCC 6803; Belongs to the P(II) protein family. | Light-repressed protein LrtA (ribosomal subunit interface protein); Might modulate either transcription and/or translation. | 0.544 |
| glnB | rpoD-2 | SYNPCC7002_A1285 | SYNPCC7002_A2014 | Nitrogen regulatory protein P-II; Similar to ssl0707 in Synechocystis sp. PCC 6803; Belongs to the P(II) protein family. | RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. | 0.625 |
| hspA | rpoA | SYNPCC7002_A0654 | SYNPCC7002_A1042 | Small heat shock protein; Similar to gene sll1514 of Synechocystis sp. PCC 6803; Belongs to the small heat shock protein (HSP20) family. | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.612 |
| hspA | rpoD-2 | SYNPCC7002_A0654 | SYNPCC7002_A2014 | Small heat shock protein; Similar to gene sll1514 of Synechocystis sp. PCC 6803; Belongs to the small heat shock protein (HSP20) family. | RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. | 0.618 |
| kaiB | rpoD-2 | SYNPCC7002_A0288 | SYNPCC7002_A2014 | Circadian clock protein KaiB; Component of the KaiABC clock protein complex, which constitutes the main circadian regulator in cyanobacteria. The KaiABC complex may act as a promoter-non-specific transcription regulator that represses transcription, possibly by acting on the state of chromosome compaction. In the complex, it decreases the phosphorylation status of KaiC. It has no effect on KaiC by itself, but instead needs the presence of both KaiA and KaiC, suggesting that it acts by antagonizing the interaction between KaiA and KaiC; Belongs to the KaiB family. | RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. | 0.615 |
| lrtA | glnB | SYNPCC7002_A0263 | SYNPCC7002_A1285 | Light-repressed protein LrtA (ribosomal subunit interface protein); Might modulate either transcription and/or translation. | Nitrogen regulatory protein P-II; Similar to ssl0707 in Synechocystis sp. PCC 6803; Belongs to the P(II) protein family. | 0.544 |
| lrtA | rpoD-2 | SYNPCC7002_A0263 | SYNPCC7002_A2014 | Light-repressed protein LrtA (ribosomal subunit interface protein); Might modulate either transcription and/or translation. | RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. | 0.656 |
| rpoA | dnaG | SYNPCC7002_A1042 | SYNPCC7002_A1345 | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | 0.566 |
| rpoA | hspA | SYNPCC7002_A1042 | SYNPCC7002_A0654 | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | Small heat shock protein; Similar to gene sll1514 of Synechocystis sp. PCC 6803; Belongs to the small heat shock protein (HSP20) family. | 0.612 |
| rpoA | rpoB | SYNPCC7002_A1042 | SYNPCC7002_A2045 | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.999 |
| rpoA | rpoC1 | SYNPCC7002_A1042 | SYNPCC7002_A2044 | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | DNA-directed RNA polymerase, gamma subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.998 |
| rpoA | rpoC2 | SYNPCC7002_A1042 | SYNPCC7002_A2043 | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the RNA polymerase beta' chain family. RpoC2 subfamily. | 0.998 |
| rpoA | rpoD-2 | SYNPCC7002_A1042 | SYNPCC7002_A2014 | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. | 0.773 |
| rpoA | rpoZ | SYNPCC7002_A1042 | SYNPCC7002_A0614 | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | DNA-directed RNA polymerase omega chain (RNAP omega subunit); Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.999 |
| rpoB | dnaG | SYNPCC7002_A2045 | SYNPCC7002_A1345 | DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | 0.838 |
| rpoB | rpoA | SYNPCC7002_A2045 | SYNPCC7002_A1042 | DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.999 |
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