Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CAK22794.1 | CAK22797.1 | SynWH7803_0368 | SynWH7803_0371 | CAAX amino terminal protease family. | Fe-S oxidoreductase. | 0.493 |
CAK22794.1 | clpS | SynWH7803_0368 | SynWH7803_0369 | CAAX amino terminal protease family. | ATP-dependent Clp protease adaptor protein ClpS; Involved in the modulation of the specificity of the ClpAP- mediated ATP-dependent protein degradation; Belongs to the ClpS family. | 0.725 |
CAK22794.1 | dapL | SynWH7803_0368 | SynWH7803_0370 | CAAX amino terminal protease family. | Aspartate aminotransferase family enzyme; Involved in the synthesis of meso-diaminopimelate (m-DAP or DL-DAP), required for both lysine and peptidoglycan biosynthesis. Catalyzes the direct conversion of tetrahydrodipicolinate to LL- diaminopimelate. | 0.508 |
CAK22797.1 | CAK22794.1 | SynWH7803_0371 | SynWH7803_0368 | Fe-S oxidoreductase. | CAAX amino terminal protease family. | 0.493 |
CAK22797.1 | cafA | SynWH7803_0371 | SynWH7803_0372 | Fe-S oxidoreductase. | Ribonucleases G and E. | 0.819 |
CAK22797.1 | clpS | SynWH7803_0371 | SynWH7803_0369 | Fe-S oxidoreductase. | ATP-dependent Clp protease adaptor protein ClpS; Involved in the modulation of the specificity of the ClpAP- mediated ATP-dependent protein degradation; Belongs to the ClpS family. | 0.486 |
CAK22797.1 | dapL | SynWH7803_0371 | SynWH7803_0370 | Fe-S oxidoreductase. | Aspartate aminotransferase family enzyme; Involved in the synthesis of meso-diaminopimelate (m-DAP or DL-DAP), required for both lysine and peptidoglycan biosynthesis. Catalyzes the direct conversion of tetrahydrodipicolinate to LL- diaminopimelate. | 0.677 |
CAK22797.1 | rnhB | SynWH7803_0371 | SynWH7803_0373 | Fe-S oxidoreductase. | Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family. | 0.788 |
cafA | CAK22797.1 | SynWH7803_0372 | SynWH7803_0371 | Ribonucleases G and E. | Fe-S oxidoreductase. | 0.819 |
cafA | clpS | SynWH7803_0372 | SynWH7803_0369 | Ribonucleases G and E. | ATP-dependent Clp protease adaptor protein ClpS; Involved in the modulation of the specificity of the ClpAP- mediated ATP-dependent protein degradation; Belongs to the ClpS family. | 0.426 |
cafA | dapF | SynWH7803_0372 | SynWH7803_1262 | Ribonucleases G and E. | Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan. | 0.408 |
cafA | dapL | SynWH7803_0372 | SynWH7803_0370 | Ribonucleases G and E. | Aspartate aminotransferase family enzyme; Involved in the synthesis of meso-diaminopimelate (m-DAP or DL-DAP), required for both lysine and peptidoglycan biosynthesis. Catalyzes the direct conversion of tetrahydrodipicolinate to LL- diaminopimelate. | 0.546 |
cafA | rnhB | SynWH7803_0372 | SynWH7803_0373 | Ribonucleases G and E. | Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family. | 0.856 |
clpS | CAK22794.1 | SynWH7803_0369 | SynWH7803_0368 | ATP-dependent Clp protease adaptor protein ClpS; Involved in the modulation of the specificity of the ClpAP- mediated ATP-dependent protein degradation; Belongs to the ClpS family. | CAAX amino terminal protease family. | 0.725 |
clpS | CAK22797.1 | SynWH7803_0369 | SynWH7803_0371 | ATP-dependent Clp protease adaptor protein ClpS; Involved in the modulation of the specificity of the ClpAP- mediated ATP-dependent protein degradation; Belongs to the ClpS family. | Fe-S oxidoreductase. | 0.486 |
clpS | cafA | SynWH7803_0369 | SynWH7803_0372 | ATP-dependent Clp protease adaptor protein ClpS; Involved in the modulation of the specificity of the ClpAP- mediated ATP-dependent protein degradation; Belongs to the ClpS family. | Ribonucleases G and E. | 0.426 |
clpS | dapL | SynWH7803_0369 | SynWH7803_0370 | ATP-dependent Clp protease adaptor protein ClpS; Involved in the modulation of the specificity of the ClpAP- mediated ATP-dependent protein degradation; Belongs to the ClpS family. | Aspartate aminotransferase family enzyme; Involved in the synthesis of meso-diaminopimelate (m-DAP or DL-DAP), required for both lysine and peptidoglycan biosynthesis. Catalyzes the direct conversion of tetrahydrodipicolinate to LL- diaminopimelate. | 0.654 |
clpS | rnhB | SynWH7803_0369 | SynWH7803_0373 | ATP-dependent Clp protease adaptor protein ClpS; Involved in the modulation of the specificity of the ClpAP- mediated ATP-dependent protein degradation; Belongs to the ClpS family. | Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family. | 0.426 |
cphA | dapB | SynWH7803_1936 | SynWH7803_1439 | Putative cyanophycin synthetase. | Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family. | 0.404 |
cphA | dapF | SynWH7803_1936 | SynWH7803_1262 | Putative cyanophycin synthetase. | Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan. | 0.535 |
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