Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CAK22701.1 | eno | SynWH7803_0275 | SynWH7803_2379 | Glutamate dehydrogenase/leucine dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | Enolase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family. | 0.406 |
CAK22701.1 | gltS | SynWH7803_0275 | SynWH7803_0385 | Glutamate dehydrogenase/leucine dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | Ferredoxin-dependent glutamate synthase. | 0.997 |
CAK22701.1 | ilvD | SynWH7803_0275 | SynWH7803_1131 | Glutamate dehydrogenase/leucine dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | Dihydroxy-acid dehydratase; Belongs to the IlvD/Edd family. | 0.919 |
amt1 | glnN | SynWH7803_0297 | SynWH7803_1458 | Ammonium transporter. | Glutamate--ammonia ligase; Belongs to the glutamine synthetase family. | 0.606 |
amt1 | gltS | SynWH7803_0297 | SynWH7803_0385 | Ammonium transporter. | Ferredoxin-dependent glutamate synthase. | 0.971 |
amt1 | trxB | SynWH7803_0297 | SynWH7803_1634 | Ammonium transporter. | Thioredoxin reductase. | 0.477 |
eno | CAK22701.1 | SynWH7803_2379 | SynWH7803_0275 | Enolase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family. | Glutamate dehydrogenase/leucine dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | 0.406 |
eno | gltS | SynWH7803_2379 | SynWH7803_0385 | Enolase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family. | Ferredoxin-dependent glutamate synthase. | 0.908 |
eno | ilvD | SynWH7803_2379 | SynWH7803_1131 | Enolase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family. | Dihydroxy-acid dehydratase; Belongs to the IlvD/Edd family. | 0.632 |
eno | narB | SynWH7803_2379 | SynWH7803_2481 | Enolase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family. | Nitrate reductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily. | 0.434 |
eno | ppc, | SynWH7803_2379 | SynWH7803_0454 | Enolase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family. | Phosphoenolpyruvate carboxylase; Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle. | 0.964 |
eno | trxB | SynWH7803_2379 | SynWH7803_1634 | Enolase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family. | Thioredoxin reductase. | 0.510 |
glnAI | glnAIII | SynWH7803_1347 | SynWH7803_2387 | Glutamine synthetase, glutamate ammonia ligase. | Glutamine synthetase III. | 0.928 |
glnAI | glnN | SynWH7803_1347 | SynWH7803_1458 | Glutamine synthetase, glutamate ammonia ligase. | Glutamate--ammonia ligase; Belongs to the glutamine synthetase family. | 0.976 |
glnAI | gltS | SynWH7803_1347 | SynWH7803_0385 | Glutamine synthetase, glutamate ammonia ligase. | Ferredoxin-dependent glutamate synthase. | 0.988 |
glnAI | narB | SynWH7803_1347 | SynWH7803_2481 | Glutamine synthetase, glutamate ammonia ligase. | Nitrate reductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily. | 0.621 |
glnAI | trxB | SynWH7803_1347 | SynWH7803_1634 | Glutamine synthetase, glutamate ammonia ligase. | Thioredoxin reductase. | 0.486 |
glnAIII | glnAI | SynWH7803_2387 | SynWH7803_1347 | Glutamine synthetase III. | Glutamine synthetase, glutamate ammonia ligase. | 0.928 |
glnAIII | glnN | SynWH7803_2387 | SynWH7803_1458 | Glutamine synthetase III. | Glutamate--ammonia ligase; Belongs to the glutamine synthetase family. | 0.913 |
glnAIII | gltS | SynWH7803_2387 | SynWH7803_0385 | Glutamine synthetase III. | Ferredoxin-dependent glutamate synthase. | 0.988 |
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