STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rbcL,Ribulose bisphosphate carboxylase large subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site. Belongs to the RuBisCO large chain family. Type I subfamily. (471 aa)    
Predicted Functional Partners:
rbcS,
Ribulose bisphosphate carboxylase small subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site (By similarity); Belongs to the RuBisCO small chain family.
 
 0.999
prk
Phosphoribulokinase.
 
 
 0.980
csoS1/ccmK1
Carboxysome shell peptide; May be involved in the formation of the carboxysome, a polyhedral inclusion where RuBisCO is sequestered.
     
 0.938
CAK22940.1
Predicted HAD superfamily phosphatase.
     
 0.909
pgk,
Phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family.
    
 0.907
CAK23540.1
Predicted kinase.
     
  0.900
mtnD
ARD/ARD' family protein (methionine salvage pathway); Catalyzes 2 different reactions between oxygene and the acireductone 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK-MTPene) depending upon the metal bound in the active site. Fe-containing acireductone dioxygenase (Fe-ARD) produces formate and 2-keto-4- methylthiobutyrate (KMTB), the alpha-ketoacid precursor of methionine in the methionine recycle pathway. Ni-containing acireductone dioxygenase (Ni-ARD) produces methylthiopropionate, carbon monoxide and formate, and does not lie on the methionine recycle pathway.
  
  
 0.807
csoS2
Carboxysome shell polypeptide, CsoS2.
 
   
 0.769
csoS3
Carboxysome shell polypeptide, CsoS3.
 
   
 0.768
CAK23810.1
Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily.
    
 
 0.754
Your Current Organism:
Synechococcus sp. WH 7803
NCBI taxonomy Id: 32051
Other names: S. sp. WH 7803, Synechococcus WH7803, Synechococcus sp. (strain WH7803), Synechococcus sp. WH7803
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