STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEF60068.1KEGG: scl:sce5426 hypothetical protein. (141 aa)    
Predicted Functional Partners:
EEF57954.1
PFAM: DoxX family protein; KEGG: lbf:LBF_1642 hypothetical protein.
  
     0.761
EEF61263.1
PFAM: FAD dependent oxidoreductase; KEGG: scl:sce6181 electron-transferring-flavoprotein dehydrogenase.
  
     0.659
EEF60069.1
Hypothetical protein.
       0.651
EEF61266.1
PFAM: Beta-ketoacyl synthase; KEGG: mxa:MXAN_6401 beta-ketoacyl synthase family protein; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
  
     0.620
EEF60070.1
PFAM: nitroreductase; KEGG: amr:AM1_2990 nitroreductase family protein.
       0.614
EEF63215.1
KEGG: ote:Oter_2062 hypothetical protein.
  
     0.572
EEF57824.1
KEGG: scl:sce0056 hypothetical protein.
  
     0.544
EEF61919.1
KEGG: ote:Oter_2062 hypothetical protein.
  
     0.538
EEF61276.1
PFAM: outer membrane lipoprotein carrier protein LolA; KEGG: dol:Dole_0380 outer membrane lipoprotein carrier protein LolA.
  
     0.533
EEF60071.1
PFAM: isochorismatase hydrolase; KEGG: ava:Ava_C0106 isochorismatase hydrolase.
       0.518
Your Current Organism:
Pedosphaera parvula
NCBI taxonomy Id: 320771
Other names: P. parvula Ellin514, Pedosphaera parvula Ellin514, Pedosphaera parvula str. Ellin514, Pedosphaera parvula strain Ellin514, bacterium Ellin514
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.