STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUH54223.1Protoporphyrinogen oxidase. (448 aa)    
Predicted Functional Partners:
cfa
Cyclopropane-fatty-acyl-phospholipid synthase.
  
 0.991
CUH54225.1
Hypothetical protein.
 
   
 0.970
CUH54224.1
Glucuronide transporter.
 
   
 0.965
CUH54222.1
Hypothetical protein.
 
  
 0.959
chrR
Transcriptional activator ChrR.
 
  
 0.958
CUH54221.1
Putative oxidoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
   
 0.931
sigK
Sigma-K factor; Belongs to the sigma-70 factor family. ECF subfamily.
 
  
 0.854
ctaG
Cytochrome c oxidase assembly protein CtaG; Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I; Belongs to the COX11/CtaG family.
 
      0.848
phrA
Deoxyribodipyrimidine photo-lyase; Belongs to the DNA photolyase family.
 
   
 0.638
yrbG
Inner membrane protein YrbG.
   
    0.574
Your Current Organism:
Shimia marina
NCBI taxonomy Id: 321267
Other names: CECT 7688, DSM 26895, JCM 13038, KCCM 42117, Rhodobacteraceae bacterium CL-TA03, S. marina, Shimia marina Choi and Cho 2006, strain CL-TA03
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