Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| CYA_1081 | CYA_2058 | CYA_1081 | CYA_2058 | Transcriptional regulator, LysR family; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family. | HAD-superfamily hydrolase, subfamily IA, variant 3; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509. | 0.533 |
| CYA_1081 | cbbL | CYA_1081 | CYA_1194 | Transcriptional regulator, LysR family; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family. | Ribulose bisphosphate carboxylase, large subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site. | 0.686 |
| CYA_1081 | cbbS | CYA_1081 | CYA_1196 | Transcriptional regulator, LysR family; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family. | Ribulose bisphosphate carboxylase, small subunit; Identified by match to protein family HMM PF00101. | 0.611 |
| CYA_2058 | CYA_1081 | CYA_2058 | CYA_1081 | HAD-superfamily hydrolase, subfamily IA, variant 3; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509. | Transcriptional regulator, LysR family; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family. | 0.533 |
| CYA_2058 | cbbL | CYA_2058 | CYA_1194 | HAD-superfamily hydrolase, subfamily IA, variant 3; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509. | Ribulose bisphosphate carboxylase, large subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site. | 0.701 |
| CYA_2058 | cbbS | CYA_2058 | CYA_1196 | HAD-superfamily hydrolase, subfamily IA, variant 3; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509. | Ribulose bisphosphate carboxylase, small subunit; Identified by match to protein family HMM PF00101. | 0.692 |
| cbbL | CYA_1081 | CYA_1194 | CYA_1081 | Ribulose bisphosphate carboxylase, large subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site. | Transcriptional regulator, LysR family; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family. | 0.686 |
| cbbL | CYA_2058 | CYA_1194 | CYA_2058 | Ribulose bisphosphate carboxylase, large subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site. | HAD-superfamily hydrolase, subfamily IA, variant 3; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509. | 0.701 |
| cbbL | cbbS | CYA_1194 | CYA_1196 | Ribulose bisphosphate carboxylase, large subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site. | Ribulose bisphosphate carboxylase, small subunit; Identified by match to protein family HMM PF00101. | 0.999 |
| cbbL | ccmK-1 | CYA_1194 | CYA_1611 | Ribulose bisphosphate carboxylase, large subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site. | Carbon dioxide concentrating mechanism protein CcmK; Identified by similarity to SP:Q03511; match to protein family HMM PF00936. | 0.667 |
| cbbL | ccmM | CYA_1194 | CYA_1614 | Ribulose bisphosphate carboxylase, large subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site. | Carbon dioxide concentrating mechanism protein CcmM; Identified by similarity to SP:Q03513. | 0.999 |
| cbbL | gpmI | CYA_1194 | CYA_2123 | Ribulose bisphosphate carboxylase, large subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site. | 2,3-bisphosphoglycerate-independent phosphoglycerate mutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate. | 0.519 |
| cbbL | pgk | CYA_1194 | CYA_0315 | Ribulose bisphosphate carboxylase, large subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site. | Phosphoglycerate kinase; Identified by similarity to SP:P74421; match to protein family HMM PF00162; Belongs to the phosphoglycerate kinase family. | 0.915 |
| cbbL | prk | CYA_1194 | CYA_1258 | Ribulose bisphosphate carboxylase, large subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site. | Phosphoribulokinase; Identified by similarity to SP:P37101; match to protein family HMM PF00485. | 0.948 |
| cbbL | rbcX | CYA_1194 | CYA_1195 | Ribulose bisphosphate carboxylase, large subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site. | Chaperon-like protein RbcX; Identified by match to protein family HMM PF02341. | 0.934 |
| cbbL | rca | CYA_1194 | CYA_0427 | Ribulose bisphosphate carboxylase, large subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site. | Ribulose bisphosphate carboxylase/oxygenase activase; Identified by similarity to SP:Q06721; match to protein family HMM PF00004; match to protein family HMM PF00101. | 0.769 |
| cbbS | CYA_1081 | CYA_1196 | CYA_1081 | Ribulose bisphosphate carboxylase, small subunit; Identified by match to protein family HMM PF00101. | Transcriptional regulator, LysR family; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family. | 0.611 |
| cbbS | CYA_2058 | CYA_1196 | CYA_2058 | Ribulose bisphosphate carboxylase, small subunit; Identified by match to protein family HMM PF00101. | HAD-superfamily hydrolase, subfamily IA, variant 3; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509. | 0.692 |
| cbbS | cbbL | CYA_1196 | CYA_1194 | Ribulose bisphosphate carboxylase, small subunit; Identified by match to protein family HMM PF00101. | Ribulose bisphosphate carboxylase, large subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site. | 0.999 |
| cbbS | ccmK-1 | CYA_1196 | CYA_1611 | Ribulose bisphosphate carboxylase, small subunit; Identified by match to protein family HMM PF00101. | Carbon dioxide concentrating mechanism protein CcmK; Identified by similarity to SP:Q03511; match to protein family HMM PF00936. | 0.684 |
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