STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CYA_2805Glycosyl hydrolase, family 57; Identified by match to protein family HMM PF03065. (735 aa)    
Predicted Functional Partners:
CYA_2004
Conserved hypothetical protein; Identified by similarity to GB:BAC09915.1.
  
    0.693
pip
Prolyl aminopeptidase; Identified by similarity to SP:P52279; match to protein family HMM PF00561; match to protein family HMM TIGR01249; Belongs to the peptidase S33 family.
       0.668
CYA_2803
PDZ domain protein; Identified by match to protein family HMM PF00595.
       0.571
CYA_2806
HNH endonuclease domain protein; Identified by match to protein family HMM PF01844.
       0.509
CYA_2800
Putative hydantoin utilization protein B; Identified by match to protein family HMM PF02538.
       0.504
CYA_2802
Hypothetical protein; Identified by Glimmer2; putative.
       0.504
cpcS2
CpeS-like protein; Covalently attaches a chromophore to Cys residue(s) of phycobiliproteins.
       0.420
CYA_0649
Putative pilus biogenesis protein; Identified by similarity to GB:AAC36156.1.
  
     0.416
CYA_2480
Putative lipoprotein.
  
     0.415
CYA_1833
Identified by match to protein family HMM PF06967.
  
     0.412
Your Current Organism:
Synechococcus sp. JA33Ab
NCBI taxonomy Id: 321327
Other names: Cyanobacteria bacterium Yellowstone A-Prime, S. sp. JA-3-3Ab, Synechococcus sp. JA-3-3Ab, Synechococcus sp. OS-type A str. JA-3-3Ab, Synechococcus sp. OS-type A strain JA-3-3Ab
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.