STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
glgA-1Glycogen/starch synthase, ADP-glucose type; Synthesizes alpha-1,4-glucan chains using ADP-glucose. (491 aa)    
Predicted Functional Partners:
glgC
Glucose-1-phosphate adenylyltransferase; Identified by match to protein family HMM PF00483; match to protein family HMM TIGR02091; Belongs to the bacterial/plant glucose-1-phosphate adenylyltransferase family.
 
 
 0.996
glgB
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
 
 0.990
CYB_0647
Glycosyl hydrolase, family 57; Identified by match to protein family HMM PF03065; Belongs to the glycosyl hydrolase 57 family.
  
 
  0.948
malQ
4-alpha-glucanotransferase; Identified by match to protein family HMM PF02446; match to protein family HMM TIGR00217.
  
 
 0.939
glgA-2
Glycogen/starch synthase, ADP-glucose type; Synthesizes alpha-1,4-glucan chains using ADP-glucose.
  
  
 
0.921
CYB_0677
Trehalose synthase/putative maltokinase; Identified by match to protein family HMM PF00128; match to protein family HMM TIGR02456; match to protein family HMM TIGR02457.
  
  
 0.906
CYB_0241
Aldehyde-alcohol dehydrogenase; Identified by similarity to SP:P17547; match to protein family HMM PF00171; match to protein family HMM PF00465; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
  
  
 0.875
cpcG1
Phycobilisome rod-core linker polypeptide cpcG1; Identified by similarity to SP:P29986; match to protein family HMM PF00427; Belongs to the phycobilisome linker protein family.
  
  
 0.706
treZ
Malto-oligosyltrehalose trehalohydrolase; Identified by match to protein family HMM PF00128; match to protein family HMM PF02922; match to protein family HMM TIGR02402.
  
  
 0.706
CYB_0632
Alpha-glucan phosphorylase, putative; Identified by match to protein family HMM PF00343; match to protein family HMM TIGR02094.
  
  
 0.701
Your Current Organism:
Synechococcus sp. JA23Ba
NCBI taxonomy Id: 321332
Other names: Cyanobacteria bacterium Yellowstone B-Prime, S. sp. JA-2-3B'a(2-13), Synechococcus sp. JA-2-3B'a(2-13)
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