STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CYB_2066GAF/SpoIIE domain protein; Identified by match to protein family HMM PF01590; match to protein family HMM PF07228. (481 aa)    
Predicted Functional Partners:
CYB_0507
Sensory box histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF01590; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM PF05227; match to protein family HMM TIGR00229.
 
  
 0.988
CYB_0177
Identified by match to protein family HMM PF01740; match to protein family HMM TIGR00377; Belongs to the anti-sigma-factor antagonist family.
 
 
 0.900
CYB_2666
Anti-anti-sigma factor; Identified by similarity to SP:Q9WVX8; match to protein family HMM PF01740; match to protein family HMM TIGR00377; Belongs to the anti-sigma-factor antagonist family.
 
 
 0.886
CYB_2327
Sensor histidine kinase; Identified by match to protein family HMM PF02518.
 
 
 0.861
CYB_1174
FHA domain protein; Identified by match to protein family HMM PF00498.
  
  
 0.841
CYB_2171
FHA domain protein; Identified by match to protein family HMM PF00498.
  
  
 0.841
pmgA
pmgA protein; Identified by similarity to GB:BAA20429.1.
 
 
 0.824
CYB_2752
Sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF01584; match to protein family HMM PF01627; match to protein family HMM PF02518.
  
  
 0.810
CYB_2190
Identified by match to protein family HMM PF01740; match to protein family HMM TIGR00377; Belongs to the anti-sigma-factor antagonist family.
 
 
 0.789
CYB_1250
Sensory box protein; Identified by match to protein family HMM PF00989; match to protein family HMM TIGR00229.
 
  
 0.688
Your Current Organism:
Synechococcus sp. JA23Ba
NCBI taxonomy Id: 321332
Other names: Cyanobacteria bacterium Yellowstone B-Prime, S. sp. JA-2-3B'a(2-13), Synechococcus sp. JA-2-3B'a(2-13)
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