STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PHYPA_021298Xyloglucan endotransglucosylase/hydrolase; Catalyzes xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues. Belongs to the glycosyl hydrolase 16 family. (310 aa)    
Predicted Functional Partners:
PHYPA_014971
Vacuolar protein sorting-associated protein 29; Belongs to the VPS29 family.
   
 
 0.674
PHYPA_010333
Vacuolar protein sorting-associated protein 29; Belongs to the VPS29 family.
   
 
 0.674
PHYPA_026596
Predicted protein.
    
 
 0.620
PHYPA_024414
Predicted protein.
    
 
 0.620
PHYPA_025553
Predicted protein.
    
 
 0.620
PHYPA_011458
AP-3 complex subunit beta; Belongs to the adaptor complexes large subunit family.
    
 0.594
PHYPA_028624
Uncharacterized protein.
   
 
 0.580
PHYPA_021968
Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.
   
 
 0.580
PHYPA_011289
Uncharacterized protein.
   
 
 0.580
PHYPA_003457
Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.
   
 
 0.580
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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