PHYPA_009947 protein (Physcomitrella patens)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

PHYPA_009947

Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (425 aa)

Predicted Functional Partners:

PHYPA_001255

0.937

PHYPA_021151

0.928

PHYPA_031064

0.920

PHYPA_003246

0.920

PHYPA_029730

0.906

PHYPA_027361

0.906

PHYPA_027404

0.906

PHYPA_020359

0.906

PHYPA_020034

0.906

PHYPA_012899

0.906

Your Current Organism:

Physcomitrella patens

NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PHYPA_001255	PHYPA_003246	A0A2K1L9X6	A0A2K1L358	Rhodanese domain-containing protein.	Uncharacterized protein.	0.818
PHYPA_001255	PHYPA_009947	A0A2K1L9X6	A0A2K1KAG2	Rhodanese domain-containing protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.937
PHYPA_001255	PHYPA_012899	A0A2K1L9X6	A0A2K1K3R7	Rhodanese domain-containing protein.	Uncharacterized protein; Belongs to the cyclin family.	0.853
PHYPA_001255	PHYPA_020034	A0A2K1L9X6	A0A2K1JE08	Rhodanese domain-containing protein.	Uncharacterized protein; Belongs to the cyclin family.	0.853
PHYPA_001255	PHYPA_020359	A0A2K1L9X6	A0A2K1J6U5	Rhodanese domain-containing protein.	Uncharacterized protein.	0.853
PHYPA_001255	PHYPA_021151	A0A2K1L9X6	A0A2K1J929	Rhodanese domain-containing protein.	Uncharacterized protein.	0.991
PHYPA_001255	PHYPA_027361	A0A2K1L9X6	A0A2K1IP40	Rhodanese domain-containing protein.	Uncharacterized protein.	0.853
PHYPA_001255	PHYPA_027404	A0A2K1L9X6	A0A2K1IPA9	Rhodanese domain-containing protein.	Uncharacterized protein.	0.853
PHYPA_001255	PHYPA_029730	A0A2K1L9X6	A0A2K1IE72	Rhodanese domain-containing protein.	Uncharacterized protein.	0.853
PHYPA_001255	PHYPA_031064	A0A2K1L9X6	A0A2K1IB47	Rhodanese domain-containing protein.	Uncharacterized protein.	0.818
PHYPA_003246	PHYPA_001255	A0A2K1L358	A0A2K1L9X6	Uncharacterized protein.	Rhodanese domain-containing protein.	0.818
PHYPA_003246	PHYPA_009947	A0A2K1L358	A0A2K1KAG2	Uncharacterized protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.920
PHYPA_003246	PHYPA_012899	A0A2K1L358	A0A2K1K3R7	Uncharacterized protein.	Uncharacterized protein; Belongs to the cyclin family.	0.630
PHYPA_003246	PHYPA_020034	A0A2K1L358	A0A2K1JE08	Uncharacterized protein.	Uncharacterized protein; Belongs to the cyclin family.	0.630
PHYPA_003246	PHYPA_020359	A0A2K1L358	A0A2K1J6U5	Uncharacterized protein.	Uncharacterized protein.	0.630
PHYPA_003246	PHYPA_027361	A0A2K1L358	A0A2K1IP40	Uncharacterized protein.	Uncharacterized protein.	0.630
PHYPA_003246	PHYPA_027404	A0A2K1L358	A0A2K1IPA9	Uncharacterized protein.	Uncharacterized protein.	0.630
PHYPA_003246	PHYPA_029730	A0A2K1L358	A0A2K1IE72	Uncharacterized protein.	Uncharacterized protein.	0.630
PHYPA_009947	PHYPA_001255	A0A2K1KAG2	A0A2K1L9X6	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Rhodanese domain-containing protein.	0.937
PHYPA_009947	PHYPA_003246	A0A2K1KAG2	A0A2K1L358	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.920

page 1 of 4

Server load: low (20%) [HD]

Permalink

Network

Cooccurrence

Experiments

Coexpression

Databases

Neighborhood

Textmining

Fusion

© STRING Consortium 2024

Credits

Access

Info

About