STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PHYPA_004759Remorin_C domain-containing protein. (347 aa)    
Predicted Functional Partners:
SYP3A1
Qa-SNARE, SYP3/Sed5p/Syntaxin 5-type.
   
 0.952
SYP3A2
Qa-SNARE, SYP3/Sed5p/Syntaxin 5-type; Belongs to the syntaxin family.
   
 0.952
PHYPA_010329
Membrin; Involved in transport of proteins from the cis/medial-Golgi to the trans-Golgi network.
    
 0.934
MEMB1A2
Membrin; Involved in transport of proteins from the cis/medial-Golgi to the trans-Golgi network.
    
 0.934
PHYPA_030820
Uncharacterized protein; Belongs to the synaptobrevin family.
    
 0.933
YKT6A1
R-SNARE, YKT6-family; Belongs to the synaptobrevin family.
    
 0.933
PHYPA_021663
Uncharacterized protein.
    
 0.923
PHYPA_005571
Uncharacterized protein.
    
 0.919
PHYPA_021772
t-SNARE coiled-coil homology domain-containing protein.
    
 0.914
PHYPA_001511
t-SNARE coiled-coil homology domain-containing protein.
    
 0.914
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.