PHYPA_005104 protein (Physcomitrella patens)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

PHYPA_005104

Uncharacterized protein. (113 aa)

Predicted Functional Partners:

PHYPA_019137

0.527

PHYPA_001174

0.527

PHYPA_022527

0.526

PHYPA_018855

0.524

PHYPA_007400

0.523

PHYPA_026461

0.522

PHYPA_019175

0.522

PHYPA_007823

0.522

PHYPA_012974

0.521

PHYPA_000235

0.521

Your Current Organism:

Physcomitrella patens

NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PHYPA_000235	PHYPA_001174	A0A2K1L745	A0A2K1L9P0	Uncharacterized protein.	Uncharacterized protein.	0.503
PHYPA_000235	PHYPA_005104	A0A2K1L745	A0A2K1KWF9	Uncharacterized protein.	Uncharacterized protein.	0.521
PHYPA_000235	PHYPA_012974	A0A2K1L745	A0A2K1K3Z9	Uncharacterized protein.	Reverse transcriptase Ty1/copia-type domain-containing protein.	0.526
PHYPA_000235	PHYPA_018855	A0A2K1L745	A0A2K1JIS6	Uncharacterized protein.	Reverse transcriptase Ty1/copia-type domain-containing protein.	0.534
PHYPA_000235	PHYPA_019137	A0A2K1L745	A0A2K1JBF0	Uncharacterized protein.	Uncharacterized protein.	0.521
PHYPA_000235	PHYPA_022527	A0A2K1L745	A0A2K1J570	Uncharacterized protein.	Uncharacterized protein.	0.526
PHYPA_000235	PHYPA_026461	A0A2K1L745	A0A2K1IST6	Uncharacterized protein.	Reverse transcriptase Ty1/copia-type domain-containing protein.	0.527
PHYPA_001174	PHYPA_000235	A0A2K1L9P0	A0A2K1L745	Uncharacterized protein.	Uncharacterized protein.	0.503
PHYPA_001174	PHYPA_005104	A0A2K1L9P0	A0A2K1KWF9	Uncharacterized protein.	Uncharacterized protein.	0.527
PHYPA_001174	PHYPA_007400	A0A2K1L9P0	A0A2K1KIY5	Uncharacterized protein.	Reverse transcriptase Ty1/copia-type domain-containing protein.	0.531
PHYPA_001174	PHYPA_007823	A0A2K1L9P0	A0A2K1KK44	Uncharacterized protein.	Uncharacterized protein.	0.521
PHYPA_001174	PHYPA_012974	A0A2K1L9P0	A0A2K1K3Z9	Uncharacterized protein.	Reverse transcriptase Ty1/copia-type domain-containing protein.	0.532
PHYPA_001174	PHYPA_018855	A0A2K1L9P0	A0A2K1JIS6	Uncharacterized protein.	Reverse transcriptase Ty1/copia-type domain-containing protein.	0.528
PHYPA_001174	PHYPA_019137	A0A2K1L9P0	A0A2K1JBF0	Uncharacterized protein.	Uncharacterized protein.	0.531
PHYPA_001174	PHYPA_019175	A0A2K1L9P0	A0A2K1JBL2	Uncharacterized protein.	Uncharacterized protein.	0.528
PHYPA_001174	PHYPA_026461	A0A2K1L9P0	A0A2K1IST6	Uncharacterized protein.	Reverse transcriptase Ty1/copia-type domain-containing protein.	0.533
PHYPA_005104	PHYPA_000235	A0A2K1KWF9	A0A2K1L745	Uncharacterized protein.	Uncharacterized protein.	0.521
PHYPA_005104	PHYPA_001174	A0A2K1KWF9	A0A2K1L9P0	Uncharacterized protein.	Uncharacterized protein.	0.527
PHYPA_005104	PHYPA_007400	A0A2K1KWF9	A0A2K1KIY5	Uncharacterized protein.	Reverse transcriptase Ty1/copia-type domain-containing protein.	0.523
PHYPA_005104	PHYPA_007823	A0A2K1KWF9	A0A2K1KK44	Uncharacterized protein.	Uncharacterized protein.	0.522

page 1 of 5

Server load: low (30%) [HD]

Permalink

Network

Cooccurrence

Experiments

Neighborhood

Databases

Fusion

Textmining

Coexpression

© STRING Consortium 2024

Credits

Access

Info

About