STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PHYPA_015170Plastid division protein FtsZ 2-1. (458 aa)    
Predicted Functional Partners:
DipM1
Peptidoglycan remodeling protein.
      
 0.858
Act5
Predicted protein.
    
 0.681
PHYPA_005833
Predicted protein.
    
 0.663
PHYPA_016711
Predicted protein.
    
 0.660
MurE
MurE synthetase.
      
 0.655
PHYPA_014971
Vacuolar protein sorting-associated protein 29; Belongs to the VPS29 family.
    
 
 0.618
PHYPA_010333
Vacuolar protein sorting-associated protein 29; Belongs to the VPS29 family.
    
 
 0.618
PHYPA_004952
Ubiquitin-like domain-containing protein.
    
  0.550
PHYPA_002934
Uncharacterized protein.
    
  0.540
PHYPA_026140
Uncharacterized protein; Belongs to the eIF-2B alpha/beta/delta subunits family.
    
   0.538
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.