STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpl250S ribosomal protein L2, chloroplastic; Belongs to the universal ribosomal protein uL2 family. (277 aa)    
Predicted Functional Partners:
rpl20
50S ribosomal protein L20, chloroplastic; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
   
 
 0.996
PHYPA_004952
Ubiquitin-like domain-containing protein.
   
 0.995
rpl16-2
50S ribosomal protein L16, chloroplastic; Belongs to the universal ribosomal protein uL16 family.
 
 0.995
rps7-2
30S ribosomal protein S7, chloroplastic; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit.
 
 
 0.995
rpl36
50S ribosomal protein L36, chloroplastic.
  
 
 0.994
rpl14
50S ribosomal protein L14, chloroplastic; Binds to 23S rRNA.
 
 0.994
rps7
Ribosomal protein S7.
  
 
 0.993
rps12-2
30S ribosomal protein S12, chloroplastic; With S4 and S5 plays an important role in translational accuracy. Located at the interface of the 30S and 50S subunits (By similarity).
  
 
 0.993
PHYPA_004762
Predicted protein.
  
 
 0.992
rps12
Ribosomal protein S12; Belongs to the universal ribosomal protein uS12 family.
  
 
 0.992
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.