STRINGSTRING
PP1S100_146V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S100_146V6.1" - Polycomb group protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S100_146V6.1Polycomb group protein (999 aa)    
Predicted Functional Partners:
PGE1501
Transcriptional repressor EED/ESC/FIE (376 aa)
     
  0.988
PP1S57_97V6.1
Annotation not available (699 aa)
     
  0.982
PP1S310_49V6.1
Annotation not available (679 aa)
     
  0.982
PP1S23_249V6.1
Annotation not available (491 aa)
     
  0.982
NFC1501
Nucleosome remodeling factor, p48 subunit (422 aa)
     
  0.981
PP1S206_25V6.1
Annotation not available (458 aa)
     
  0.980
HDA1504
Histone deacetylase (723 aa)
   
  0.929
HDA1505
Predicted protein (774 aa)
   
  0.929
HDA1506
Histone deacetylase (431 aa)
   
  0.929
PpMET1
Cytosine-specific methyltransferase (1565 aa)
     
  0.910
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: Bryophyta, Bryophytina, Bryopsida, Funariaceae, Funariales, Funariidae, Moss Superclass V, Musci, P. patens, Physcomitrella, Physcomitrella Bruch & Schimp, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt., bryophytes, mosses
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