STRINGSTRING
PP1S101_148V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S101_148V6.1" - Tubby-like protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S101_148V6.1Tubby-like protein (474 aa)    
Predicted Functional Partners:
PP1S56_81V6.1
Annotation not available (820 aa)
     
  0.697
PP1S41_228V6.1
Predicted protein (362 aa)
       
      0.647
PP1S215_91V6.1
Predicted protein (353 aa)
       
      0.647
PP1S103_75V6.1
Predicted protein (350 aa)
       
      0.647
PP1S9_221V6.1
Annotation not available (225 aa)
     
  0.636
PP1S155_64V6.1
Annotation not available (143 aa)
     
  0.618
PP1S155_63V6.1
Intraflagellar transport protein (1140 aa)
     
  0.618
PP1S6_439V6.1
Intraflagellar transport protein IFT122 (1185 aa)
     
    0.600
PP1S162_84V6.1
Annotation not available (1206 aa)
     
  0.599
PP1S88_186V6.1
Predicted protein (1189 aa)
         
  0.587
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: Bryophyta, Bryophytina, Bryopsida, Funariaceae, Funariales, Funariidae, Moss Superclass V, Musci, P. patens, Physcomitrella, Physcomitrella Bruch & Schimp, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt., bryophytes, mosses
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