STRINGSTRING
PP1S101_215V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S101_215V6.1" - Predicted protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S101_215V6.1Predicted protein; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase (822 aa)    
Predicted Functional Partners:
PP1S14_204V6.1
Predicted protein (456 aa)
   
  0.906
PP1S89_236V6.1
Predicted protein (382 aa)
   
 
  0.881
PP1S210_66V6.1
annotation not available (615 aa)
 
  0.869
PP1S92_3V6.1
Predicted protein (606 aa)
 
  0.864
PP1S10201_1V6.1
Predicted protein (345 aa)
 
0.856
PP1S21_151V6.1
Predicted protein (440 aa)
 
 
  0.846
PP1S7_98V6.1
Alkyl transferase; Belongs to the UPP synthase family (408 aa)
     
 
  0.821
PP1S73_243V6.2
Predicted protein (485 aa)
     
 
  0.821
PP1S62_157V6.4
annotation not available (485 aa)
     
 
  0.821
PP1S34_364V6.1
Alkyl transferase; Belongs to the UPP synthase family (387 aa)
     
 
  0.821
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
Server load: low (7%) [HD]