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PP1S102_15V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S102_15V6.1" - ATP-dependent Clp protease proteolytic subunit in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S102_15V6.1ATP-dependent Clp protease proteolytic subunit (250 aa)    
Predicted Functional Partners:
3989066
Predicted protein; Belongs to the universal ribosomal protein uL16 family (561 aa)
   
   
  0.952
PP1S98_222V6.1
Predicted protein (701 aa)
 
  0.872
PP1S163_100V6.1
Predicted protein (695 aa)
 
  0.872
PP1S171_84V6.1
Predicted protein (723 aa)
 
  0.871
PP1S33_311V6.1
annotation not available (256 aa)
   
 
  0.802
PP1S12_85V6.2
Predicted protein (249 aa)
   
 
  0.802
rpoA
DNA-directed RNA polymerase subunit alpha, chloroplastic; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (450 aa)
   
   
  0.791
PP1S277_34V6.1
Predicted protein; Belongs to the peroxidase family (357 aa)
           
  0.746
PP1S13_387V6.1
Predicted protein (232 aa)
         
  0.719
PP1S456_23V6.1
Predicted protein (521 aa)
   
   
  0.719
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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