• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
PP1S104_185V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S104_185V6.1" - Predicted protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S104_185V6.1Predicted protein (306 aa)    
Predicted Functional Partners:
PP1S157_48V6.1
Predicted protein (443 aa)
     
 
  0.989
PP1S145_94V6.1
Predicted protein (644 aa)
     
 
  0.978
PP1S90_95V6.1
DNA primase ; Belongs to the eukaryotic-type primase small subunit family (455 aa)
     
 
  0.976
PP1S357_37V6.1
Predicted protein (775 aa)
     
 
  0.973
PP1S434_20V6.1
Predicted protein (437 aa)
     
 
  0.973
PP1S127_26V6.1
DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication (523 aa)
     
 
  0.972
PP1S9_156V6.1
annotation not available (829 aa)
     
 
  0.960
PP1S3_424V6.1
annotation not available (153 aa)
     
 
  0.951
PP1S133_35V6.1
Predicted protein; DNA polymerase (2249 aa)
     
 
  0.951
PP1S172_96V6.1
DNA helicase; Belongs to the MCM family (901 aa)
     
 
  0.949
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
Server load: low (7%) [HD]