STRINGSTRING
PP1S105_41V6.3 protein (Physcomitrella patens) - STRING interaction network
"PP1S105_41V6.3" - Annotation not available in Physcomitrella patens
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S105_41V6.3Annotation not available (254 aa)    
Predicted Functional Partners:
PP1S41_19V6.1
Predicted protein (874 aa)
     
  0.990
PP1S14_125V6.1
Predicted protein (881 aa)
     
  0.990
PP1S70_106V6.1
Predicted protein (533 aa)
     
  0.982
PP1S318_71V6.1
Predicted protein (373 aa)
     
  0.982
PP1S29_139V6.1
Predicted protein (368 aa)
     
  0.982
PP1S267_86V6.1
Predicted protein (224 aa)
     
  0.982
PP1S17_322V6.1
Annotation not available (131 aa)
     
  0.982
PP1S155_106V6.1
U1 small nuclear ribonucleoprotein C ; Component of the U1 snRNP, which is essential for recognition of the pre-mRNA 5’ splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5’ splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5’ splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates E complex formation by stabilizing the base pairing of the 5’ end of the U1 snRNA and the 5’ splice-site region (224 aa)
     
  0.982
PP1S47_73V6.1
Annotation not available (667 aa)
     
  0.981
PP1S141_20V6.1
Predicted protein (675 aa)
     
  0.981
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: Bryophyta, Bryophytina, Bryopsida, Funariaceae, Funariales, Funariidae, Moss Superclass V, Musci, P. patens, Physcomitrella, Physcomitrella Bruch & Schimp, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt., bryophytes, mosses
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