STRINGSTRING
PP1S105_45V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S105_45V6.1" - Predicted protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S105_45V6.1Predicted protein (590 aa)    
Predicted Functional Partners:
PP1S641_1V6.1
Predicted protein (807 aa)
       
      0.853
PP1S141_30V6.1
Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer (364 aa)
         
  0.702
PP1S1924_1V6.1
Predicted protein (1047 aa)
         
  0.702
PP1S180_53V6.5
Xylose isomerase (476 aa)
         
  0.702
PP1S50_192V6.1
annotation not available (636 aa)
           
  0.689
PP1S144_165V6.1
annotation not available (206 aa)
           
  0.689
PP1S16_46V6.1
annotation not available (462 aa)
           
  0.680
PP1S2_200V6.1
annotation not available (372 aa)
         
  0.665
PP1S9287_1V6.1
Predicted protein (168 aa)
         
  0.664
PP1S2988_2V6.1
Predicted protein (278 aa)
         
  0.664
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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