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STRINGSTRING
PP1S106_120V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S106_120V6.1" - annotation not available in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S106_120V6.1annotation not available (458 aa)    
Predicted Functional Partners:
3989066
Predicted protein; Belongs to the universal ribosomal protein uL16 family (561 aa)
   
 
  0.943
PP1S197_12V6.1
Predicted protein (145 aa)
   
 
  0.934
PP1S89_20V6.1
Predicted protein (142 aa)
     
 
  0.933
PP1S328_43V6.1
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (114 aa)
     
 
  0.926
PP1S111_158V6.1
Predicted protein (73 aa)
   
 
  0.924
PP1S93_68V6.1
Predicted protein (422 aa)
   
 
  0.923
PP1S79_74V6.1
Predicted protein (324 aa)
   
 
  0.923
GTG1501
Transcription elongation factor SPT4 homolog; May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex (120 aa)
     
 
  0.919
PP1S30_177V6.1
Uncharacterized protein (147 aa)
     
 
  0.919
PP1S403_37V6.1
Predicted protein (56 aa)
     
 
  0.919
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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