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STRINGSTRING
PP1S108_25V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S108_25V6.1" - Predicted protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S108_25V6.1Predicted protein (567 aa)    
Predicted Functional Partners:
PP1S74_70V6.1
Predicted protein (451 aa)
       
 
  0.661
PP1S6_371V6.1
Predicted protein (423 aa)
       
 
  0.661
PP1S5_325V6.2
annotation not available (317 aa)
       
 
  0.661
rac2
Predicted protein; Rop-family small GTPase ; Belongs to the small GTPase superfamily. Rho family (196 aa)
       
 
  0.611
Rop3
Rop-family small GTPase ; Belongs to the small GTPase superfamily. Rho family (196 aa)
       
 
  0.611
ROP2
Rac-like GTP binding protein; Rop-family small GTPase ; Belongs to the small GTPase superfamily. Rho family (196 aa)
       
 
  0.611
Rop4
Predicted protein; Rop-family small GTPase (196 aa)
       
 
  0.611
PP1S21_105V6.7
Predicted protein; Belongs to the peroxidase family (300 aa)
       
      0.607
PP1S334_27V6.1
Predicted protein (380 aa)
     
 
  0.591
CBL02
Calcineurin B-like protein 02 (213 aa)
     
 
  0.583
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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