• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
PP1S108_5V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S108_5V6.1" - Predicted protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S108_5V6.1Predicted protein (397 aa)    
Predicted Functional Partners:
PP1S13_446V6.1
Predicted protein (1408 aa)
   
 
  0.903
PP1S354_15V6.1
Predicted protein (270 aa)
   
   
  0.533
PP1S197_12V6.1
Predicted protein (145 aa)
   
   
  0.523
PP1S66_284V6.1
Predicted protein (580 aa)
         
  0.521
PP1S152_64V6.1
50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit (113 aa)
   
   
  0.504
PP1S145_173V6.1
Predicted protein (388 aa)
           
  0.499
PP1S25_21V6.1
Predicted protein (864 aa)
         
  0.494
3989066
Predicted protein; Belongs to the universal ribosomal protein uL16 family (561 aa)
   
   
  0.477
PP1S295_46V6.1
Predicted protein (1014 aa)
   
   
  0.476
PP1S102_63V6.1
Predicted protein (503 aa)
           
  0.469
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
Server load: low (11%) [HD]