STRINGSTRING
PP1S108_75V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S108_75V6.1" - Predicted protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S108_75V6.1Predicted protein (283 aa)    
Predicted Functional Partners:
PP1S66_107V6.1
Predicted protein (475 aa)
   
          0.505
PP1S89_87V6.1
Predicted protein (473 aa)
   
          0.502
PP1S323_14V6.2
Predicted protein (340 aa)
   
          0.497
PP1S16_360V6.1
Annotation not available (295 aa)
   
          0.482
PP1S4_415V6.1
Predicted protein (181 aa)
   
          0.446
PP1S532_3V6.1
Predicted protein (348 aa)
   
          0.438
PP1S253_40V6.1
Predicted protein (360 aa)
   
          0.430
PP1S164_112V6.1
Annotation not available (414 aa)
   
          0.426
PP1S342_35V6.1
Predicted protein (211 aa)
   
          0.419
PP1S152_50V6.1
Predicted protein (154 aa)
   
          0.419
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: Bryophyta, Bryophytina, Bryopsida, Funariaceae, Funariales, Funariidae, Moss Superclass V, Musci, P. patens, Physcomitrella, Physcomitrella Bruch & Schimp, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt., bryophytes, mosses
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