• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
PP1S110_116V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S110_116V6.1" - Predicted protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S110_116V6.1Predicted protein (848 aa)    
Predicted Functional Partners:
PP1S194_131V6.1
Predicted protein (579 aa)
           
  0.621
PP1S124_3V6.2
Predicted protein (420 aa)
           
  0.597
PP1S47_57V6.1
Predicted protein (424 aa)
           
  0.529
PP1S76_78V6.1
Predicted protein (574 aa)
       
 
  0.524
PP1S115_80V6.1
Predicted protein (377 aa)
       
 
  0.524
PP1S570_1V6.1
annotation not available (1074 aa)
     
   
  0.523
PP1S358_10V6.1
Predicted protein (1075 aa)
     
   
  0.523
PP1S30_364V6.1
annotation not available (525 aa)
     
   
  0.523
PP1S32_198V6.1
Predicted protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family (482 aa)
     
   
  0.515
PP1S50_92V6.1
Predicted protein (564 aa)
           
  0.515
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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