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  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
PP1S112_139V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S112_139V6.1" - annotation not available in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S112_139V6.1annotation not available (326 aa)    
Predicted Functional Partners:
PP1S288_38V6.1
Predicted protein (155 aa)
     
 
  0.939
PP1S181_25V6.1
Predicted protein (166 aa)
     
 
  0.939
GTF1502.1
TATA-box binding protein, component of TFIID and TFIIIB (211 aa)
       
 
  0.934
GTF1502.2
TATA-box binding protein, component of TFIID and TFIIIB (265 aa)
       
 
  0.934
PP1S217_34V6.1
Predicted protein (161 aa)
       
 
  0.782
CHR1532
annotation not available (2140 aa)
       
 
  0.710
PP1S329_24V6.1
Predicted protein (153 aa)
       
 
  0.631
PP1S131_17V6.1
Predicted protein (107 aa)
           
  0.608
PP1S37_218V6.1
Predicted protein (377 aa)
       
 
  0.599
PP1S79_131V6.1
annotation not available (407 aa)
       
 
  0.595
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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