STRINGSTRING
PP1S112_185V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S112_185V6.1" - Predicted protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S112_185V6.1Predicted protein (436 aa)    
Predicted Functional Partners:
PP1S193_68V6.1
Predicted protein (343 aa)
   
          0.504
PP1S397_37V6.1
Predicted protein (303 aa)
   
          0.499
PP1S36_177V6.1
Predicted protein (302 aa)
   
          0.499
PP1S58_96V6.1
Predicted protein (433 aa)
   
          0.496
cpk19
Cpk19 calcium-dependent protein kinase (549 aa)
   
          0.495
cpk17
Cpk17 calcium-dependent protein kinase (496 aa)
   
          0.495
cpk15
Cpk15 calcium-dependent protein kinase (527 aa)
   
          0.490
cpk5
Cpk5 calcium-dependent protein kinase (524 aa)
   
          0.489
PP1S364_61V6.1
Predicted protein (528 aa)
   
          0.489
CPK13
Cpk13 calcium-dependent protein kinase (523 aa)
   
          0.488
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: Bryophyta, Bryophytina, Bryopsida, Funariaceae, Funariales, Funariidae, Moss Superclass V, Musci, P. patens, Physcomitrella, Physcomitrella Bruch & Schimp, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt., bryophytes, mosses
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