STRINGSTRING
PP1S114_169V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S114_169V6.1" - Predicted protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S114_169V6.1Predicted protein (632 aa)    
Predicted Functional Partners:
GRP1
Predicted protein (162 aa)
           
  0.471
PhotB1
PHOTB1 phototropin B1 blue light photoreceptor (1133 aa)
       
      0.434
PHOTA3
PHOTA3 phototropin photoreceptor (1098 aa)
       
      0.434
PP1S59_175V6.1
PHOTA4 phototropin blue light photoreceptor (868 aa)
       
      0.434
PHOTB2
PHOTB2 phototropin B2 blue light photoreceptor (1171 aa)
       
      0.434
PhotA2
PHOTA2 phototropin A2 blue light photoreceptor (1095 aa)
       
      0.434
PHOTA1
PHOTA1 phototropin A1 blue light photoreceptor (1070 aa)
       
      0.434
PP1S438_26V6.1
Predicted protein (590 aa)
           
  0.407
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: Bryophyta, Bryophytina, Bryopsida, Funariaceae, Funariales, Funariidae, Moss Superclass V, Musci, P. patens, Physcomitrella, Physcomitrella Bruch & Schimp, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt., bryophytes, mosses
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