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STRINGSTRING
PP1S11533_1V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S11533_1V6.1" - Predicted protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S11533_1V6.1Predicted protein (262 aa)    
Predicted Functional Partners:
PP1S272_58V6.1
Predicted protein (302 aa)
         
  0.618
PP1S19_36V6.1
Predicted protein (626 aa)
         
  0.606
PP1S169_145V6.1
Predicted protein (703 aa)
         
  0.584
CHLH2
CHLH2 like Mg protoporphyrin IX chelatase subunit H protein (1420 aa)
   
   
  0.557
CHLH1
CHLH2 like Mg protoporphyrin IX chelatase subunit H protein (1420 aa)
   
   
  0.557
PP1S116_45V6.1
annotation not available (117 aa)
   
   
  0.557
PP1S58_172V6.1
Predicted protein; Belongs to the precorrin methyltransferase family (452 aa)
         
  0.548
PP1S10125_1V6.1
Predicted protein; Belongs to the precorrin methyltransferase family (344 aa)
         
  0.548
PP1S286_15V6.1
Predicted protein (820 aa)
     
        0.535
PP1S80_97V6.1
Predicted protein (429 aa)
         
  0.534
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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