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STRINGSTRING
PP1S118_55V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S118_55V6.1" - Predicted protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S118_55V6.1Predicted protein (430 aa)    
Predicted Functional Partners:
PP1S37_38V6.1
Pectate lyase (364 aa)
 
     
  0.632
PP1S298_46V6.1
Predicted protein (363 aa)
   
   
  0.564
PP1S52_71V6.1
Predicted protein (350 aa)
   
   
  0.561
PP1S116_9V6.1
Predicted protein; Belongs to the glycosyl hydrolase 28 family (496 aa)
 
     
  0.525
PP1S477_5V6.1
Predicted protein (483 aa)
           
  0.524
PP1S195_48V6.2
Mannose-6-phosphate isomerase ; Belongs to the mannose-6-phosphate isomerase type 1 family (430 aa)
     
   
  0.522
PP1S15_422V6.2
Mannose-6-phosphate isomerase ; Belongs to the mannose-6-phosphate isomerase type 1 family (427 aa)
     
   
  0.522
PP1S375_23V6.1
Predicted protein; Belongs to the glycosyl hydrolase 28 family (498 aa)
 
     
  0.521
PP1S471_23V6.1
Predicted protein (1276 aa)
           
  0.521
PP1S353_28V6.1
Predicted protein (439 aa)
           
  0.520
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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