STRINGSTRING
PP1S11_47V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S11_47V6.1" - Predicted protein in Physcomitrella patens
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S11_47V6.1Predicted protein (363 aa)    
Predicted Functional Partners:
PP1S76_212V6.1
Predicted protein (171 aa)
           
  0.480
PP1S39_352V6.1
Predicted protein; Scaffold protein for the de novo synthesis of iron- sulfur (Fe-S) clusters within mitochondria, which is required for maturation of both mitochondrial and cytoplasmic [2Fe-2S] and [4Fe-4S] proteins (173 aa)
           
  0.480
PP1S311_27V6.1
Predicted protein (1488 aa)
           
  0.416
PP1S89_79V6.1
Annotation not available (301 aa)
         
  0.410
PP1S201_13V6.1
Predicted protein (287 aa)
         
  0.410
PP1S16_28V6.1
Annotation not available (270 aa)
         
  0.410
PP1S42_67V6.1
Predicted protein (2040 aa)
           
  0.407
PP1S138_176V6.1
Predicted protein (2032 aa)
           
  0.407
PP1S102_63V6.1
Predicted protein (503 aa)
           
  0.407
PP1S102_59V6.1
Predicted protein (500 aa)
           
  0.407
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: Bryophyta, Bryophytina, Bryopsida, Funariaceae, Funariales, Funariidae, Moss Superclass V, Musci, P. patens, Physcomitrella, Physcomitrella Bruch & Schimp, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt., bryophytes, mosses
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