• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
PP1S122_120V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S122_120V6.1" - annotation not available in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S122_120V6.1annotation not available (333 aa)    
Predicted Functional Partners:
PP1S27_307V6.1
annotation not available (316 aa)
     
 
0.874
PP1S45_76V6.2
Protoporphyrinogen oxidase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX (521 aa)
           
  0.721
PP1S28_304V6.1
Protoporphyrinogen oxidase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX (570 aa)
           
  0.721
ppabcb22
annotation not available (562 aa)
           
  0.674
PP1S10556_1V6.1
annotation not available (272 aa)
           
  0.674
PP1S78_211V6.1
Predicted protein (440 aa)
       
 
  0.673
PP1S450_21V6.3
Delta-aminolevulinic acid dehydratase ; Belongs to the ALAD family (431 aa)
           
  0.665
HEMB
Delta-aminolevulinic acid dehydratase, chloroplastic; Catalyzes an early step in the biosynthesis of tetrapyrroles. Binds two molecules of 5-aminolevulinate per subunit, each at a distinct site, and catalyzes their condensation to form porphobilinogen (By similarity); Belongs to the ALAD family (454 aa)
           
  0.665
PP1S5_369V6.1
Uroporphyrinogen decarboxylase ; Belongs to the uroporphyrinogen decarboxylase family (430 aa)
     
   
  0.627
PP1S3_96V6.2
Predicted protein (411 aa)
     
   
  0.627
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
Server load: low (8%) [HD]