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STRINGSTRING
PP1S122_34V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S122_34V6.1" - Predicted protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S122_34V6.1Predicted protein (584 aa)    
Predicted Functional Partners:
PP1S373_39V6.1
Predicted protein (251 aa)
           
  0.613
PP1S162_142V6.1
Predicted protein (270 aa)
           
  0.613
PP1S4_33V6.1
Predicted protein (345 aa)
           
  0.602
PP1S226_85V6.1
annotation not available (789 aa)
           
  0.601
PP1S6_416V6.1
Predicted protein (344 aa)
       
 
  0.573
PP1S98_102V6.1
Predicted protein (579 aa)
       
 
  0.556
PP1S69_169V6.1
Predicted protein (525 aa)
       
 
  0.556
PP1S28_231V6.1
Uncharacterized protein (609 aa)
       
 
  0.551
PP1S67_171V6.1
Predicted protein (296 aa)
           
  0.544
PP1S480_1V6.1
Protein transport protein sec16 (935 aa)
           
  0.523
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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