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STRINGSTRING
PP1S124_108V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S124_108V6.1" - Retinoblastoma-related protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S124_108V6.1Retinoblastoma-related protein;3 (1080 aa)    
Predicted Functional Partners:
PP1S9_156V6.1
annotation not available (829 aa)
     
 
  0.944
NFC1501
Nucleosome remodeling factor, p48 subunit (422 aa)
     
 
  0.942
PP1S31_86V6.1
DNA helicase; Belongs to the MCM family (713 aa)
     
 
  0.937
PP1S74_252V6.1
Predicted protein; DP transcription factor;2 (307 aa)
     
 
  0.937
PP1S37_43V6.1
Predicted protein; DP transcription factor;3 (304 aa)
     
 
  0.937
PP1S219_101V6.1
Predicted protein (241 aa)
     
 
  0.937
PP1S97_96V6.1
annotation not available (428 aa)
     
 
  0.934
e2f
Putative E2F transcription factor (433 aa)
     
 
  0.934
PP1S364_42V6.1
Predicted protein (463 aa)
     
 
  0.934
E2F
E2F transcription factor;3; Predicted protein (400 aa)
     
 
  0.934
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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